Quantitative Ecology

Refereed Articles 1989 | 1990 | 1991 | 1992 | 1993 | 1994 | 1995 | 1996 | 1997 | 1998 | 1999 | 2000 | 2001 | 2002 | 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | Submitted 

 

Submitted

  • Alofs, K.M. and D.A. Jackson. Historical species associations and body size indicate which species are vulnerable to climate-induced range expansions by predators.(submitted)
  • Braoudakis, G.V. and D.A. Jackson. Effects of lake size, isolation and piscivorous predator presence on nested fish community structure.(submitted)
  • Kim, J-W. and D.A. Jackson.  Quantifying size and shape of lakes: advances in, and comparisons of approaches. (submitted)
  • Wang, L. and D.A. Jackson. Effects of sample size and detection limit on the performance of species distribution modeling. (submitted)

2015

  • Melles, S.J., C. Chu, K.M. Alofs, and D.A. Jackson. Potential spread of Great Lakes fishes given climate change and proposed dams: an approach using circuit theory to evaluate invasion risk.  Landscape Ecology DOI 10.1007/s10980-014-0114-z (in press, email me for a pdf)

2014

  • Alofs, K.M. and D.A. Jackson.  Meta-analysis suggests biotic resistance in freshwater environments is driven by consumption rather than competition.  Ecology 95:3259-3270 http://dx.doi.org/10.1890/14-0060.1  (email me for a pdf)
  • Austen, E., D.A. Jackson, and A.E. Weis. 2014. Describing flowering schedule shape through multivariate ordination. International Journal of Plant Sciences 175: 70-79.
  • Scott, C.E., D.A. Jackson, and A.P. Zimmerman. 2014.  Environmental and algal community influences on benthic algal extracellular material in Lake Opeongo, Ontario. Freshwater Science 33: 568-576 (email me for a pdf)
  • Wang, L. and D.A. Jackson. 2014.  Shaping up model transferability and generality of species distribution modeling for predicting invasions: implications from a study on Bythotrephes longimanus. Biological Invasions 16:2079-2103.  DOI: 10.1007/s10530-014-0649-6 (email me for a pdf)

2013

  • Neff, M.R. and D.A. Jackson. 2013. Regional-scale patterns in community concordance: testing the roles of historical biogeography versus contemporary abiotic controls on stream community composition. Canadian Journal of Fisheries and Aquatic Sciences. 70: 1141-1150.  DOI: 10.1139/cjfas-2012-0497. (email me for a pdf)
  • Wang, L. and D.A. Jackson. Shaping up model transferability and generality of species distribution modeling for predicting invasions: implications from a study on Bythotrephes longimanus. (in review)
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2012

  • Brown, C., Arbour, J. and D.A. Jackson. 2012. Testing of the effect of missing data estimation and distribution in morphometric multivariate data analyses. Systematic Biology 61:941-954. doi:10.1093/sysbio/sys04. (email me for a pdf)
  • Poos, M.S. and D.A. Jackson. 2012. Addressing the removal of rare species in multivariate bioassessments: the impact of methodological choices. Ecological Indicators 18: 82-90. (pdf) doi: 10.1016/j.ecolind.2011.10.008

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2011

  • Schwalb, A.N., K. Cottenie, K., M.S. Poos, and J. Ackerman. 2011. Dispersal limitation of unionid mussels and implications for their conservation. Freshwater Biology 56: 1509-1518. (pdf) doi: 10.1111/j.1365-2427.2011.02587.x  **
  • Strecker, A.L., J.M. Casselman, M.-J. Fortin, D.A. Jackson, M.S. Ridgway, P.A. Abrams, and B.J. Shuter. 2011. A Multi-scale comparison of trait linkages to environmental and spatial variables in fish communities across a large freshwater lake. Oecologia 166:819-831. (pdf) doi: 10.1007/s00442-011-1924-1
  • Walker, S.C. and D.A. Jackson. 2011. Random-effects ordination: describing and predicting multivariate correlations and co-occurrences.  Ecological Monographs 81:635-663. (pdf) doi: 10.1890/11-0886.1
  • Wang, L. and D.A. Jackson. 2011. Modeling the establishment of invasive species: Habitat and biotic interactions influencing the establishment of Bythotrephes longimanus. Biological Invasions 13:2499-2512. doi: 10.1007/s10530-011-0071-2. (email me for a pdf)

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2010

  • Jackson, D.A., S.C. Walker, and M.S. Poos. 2010. Cluster analysis of fish community data: “New” tools for determining meaningful groups of sites and species assemblages. Pages 503-527 In Community Ecology of Stream Fishes: Concepts, Approaches, and Techniques. K.B. Gido and D.A. Jackson (eds) American Fisheries Society. (pdf)

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2009

  • Biernaskie, J.M., S.C. Walker, and R.J. Gegear. 2009. Bumblebees learn to forage like Bayesians. American Naturalist 174:413-423.  doi: 10.1086/603629. (email me for a pdf)
  • Poos, M., A.J. Dextrase, A.N. Schwalb, and J.D. Ackerman. 2009. Secondary invasion of the round goby into high diversity Great Lakes tributaries and species at risk hotspots: potential new concerns for endangered freshwater species. Biological Invasions 12:1269-1284. (pdf) doi: 10.1007/s10530-009-9545-x
  • Poos, M.S., S.C. Walker and D.A. Jackson. 2009. Functional-diversity indices can be driven by methodological choices and species richness. Ecology 90:341-347. (pdf) 10.1890/08-1638.1
  • Rising, J.D., D.A. Jackson, and H.B. Fokidis. 2009. Geographic variation in plumage pattern and coloration of Savannah Sparrow. Wilson Journal of Ornithology 121:253-264. (pdf) doi: 10.1676/08-077.1
  • Sharma, S., D.A. Jackson, and C.K. Minns. 2009. Quantifying the potential effects of climate change and the invasion of smallmouth bass on native lake trout populations across Canadian lakes. Ecography 32:517-525. (pdf) doi:10.1111/j.1600-0587.2008.05544.x

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2008

  • Walker, S.C., M.S. Poos, and D.A. Jackson 2008. Functional rarefaction: estimating functional diversity from field data. Oikos 117:286-296.  (pdf) doi:10.1111/j.2007.0030-1299.16171.x
  • Sharma, S. S.C. Walker, and D.A. Jackson. 2008. Empirical modeling of lake water temperature relationships: A comparison of predictive modeling approaches. Freshwater Biology 53:897-911. (pdf) doi:10.1111/j.1365-2427.2008.01943.x

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2007

  • Sharma, S., D.A. Jackson, C.K. Minns and B.J. Shuter. 2007. Will northern fish populations be in hot water because of climate change? Global Change Biology 13:2052-2064. (pdf) doi:10.1111/j.1365-2486.2007.01426.x
  • Hirst, C.N. and D.A. Jackson. 2007. Reconstructing community relationships: the impact of sampling error, ordination approach, and gradient length. Diversity and Distributions 13:361-371. (pdf) doi:10.1111/j.1472-4642.2007.00307.x

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2006

  • Caron, J.B., and D.A. Jackson. 2006. Taphonomy of the Greater Phyllopod Bed Community, Burgess Shale. Palaois 21:451-465. (pdf) doi: 10.2110/palo.2003.P05-070R
  • MacRae, P.S.D., and D.A. Jackson. 2006. Characterizing north-temperature lake littoral fish communities: a comparison between distance sampling and minnow traps. Canadian Journal of Fisheries and Aquatic Sciences 63:558-569. doi: 10.1139/f05-240. (email me for a pdf)
  • Mayo, J.S. and D.A. Jackson. 2006. Quantifying littoral vertical habitat structure and fish community associations using underwater visual census. Environmental Biology of Fishes 75:395-407. (pdf) doi: 10.1007/s10641-005-5150-8
  • Paavola, R., Muotka, T., Virtanen, R., Heino, J., Jackson, D. and A. Maki-Petays. 2006. Spatial scale affects community concordance among fishes, benthic macroinvertebrates and bryophytes in boreal streams. Ecological Applications 16:368-379. (pdf) doi: 10.1890/03-5410

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2005

  • Peres-Neto, P.R., D.A. Jackson, and K.M. Somers. 2005. How many principal components? stopping rules for determining the number of non-trivial axes revisited. Computational Statistics and Data Analysis 49:974-997. (pdf) doi: 10.1016/j.csda.2004.06.015

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2004

  • Jackson, D.A. and Y. Chen. 2004. Robust principal component analysis and outlier detection with ecological data. Environmetrics 15:129-139. (pdf) doi: 10.1002/env.628

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2003

  • Peres-Neto, P.R., Jackson , D.A. and K.M. Somers. 2003. Giving meaningful interpretation to ordination axes: assessing loading significance in principal component analysis. Ecology 84:2347-2363. (pdf) doi: 10.1890/00-0634

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2002

  • Olden, J.D. and D.A. Jackson. 2002. A comparison of statistical models for modelling fish species distributions. Freshwater Biology 47:1976-1995. (pdf) doi: 10.1046/j.1365-2427.2002.00945.x
  • Olden, J.D., and D.A. Jackson. 2002. Illuminating the ‘black box’: Understanding variable contributions in artificial neural networks. Ecological Modeling 154:135-150. (pdf) doi: 10.1016/S0304-3800(02)00064-9
  • Olden, J.D., Jackson, D.A., and P.R. Peres-Neto. 2002. Predictive Models of Fish Species Distributions: A Note on Proper Validation and Chance Predictions. Transactions of the American Fisheries Society 131: 329-336. (pdf) doi: 10.1577/1548-8659(2002)131<0329:PMOFSD>2.0.CO;2
  • Wilkinson, M., Peres-Neto, P.R. Foster, P., and Mocriff, C. 2002. Type I error rates of the parsimony PTP test. Systematic Biology 51:524-527. (pdf) doi: 10.1080/10635150290069931

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2001

  • Chen, Y. and D.A. Jackson. 2001. An empirical study on estimators for linear regression analyses in fisheries. Fisheries Research 49:193-206. (pdf) doi: 10.1016/S0165-7836(00)00195-8
  • Olden, J.D., and D.A. Jackson. 2001. Fish habitat relationships in lakes: gaining predictive and explanatory insight by using artificial neural networks. Transactions of the American Fisheries Society. 130:878-897. (pdf) doi: 10.1577/1548-8659(2001)130<0878:FHRILG>2.0.CO;2
  • Olden, J.D., and B.D. Neff. 2001. Cross correlation bias in lag analysis of aquatic time series. Marine Biology 138: 1063-1070.  doi: 10.1007/s002270000517. (email me for a pdf)
  • Olden, J.D., Jackson, D.A., and P.R. Peres-Neto. 2001. Spatial isolation and fish communities in drainage lakes. Oecologia 127:572-585. (pdf) doi: 10.1007/s004420000620
  • Peres-Neto, P.R., and D.A. Jackson. 2001. The importance of scaling of multivariate analyses in ecological studies. Ecoscience 8:522-526. (pdf)
  • Peres-Neto, P.R., and J.D. Olden. 2001. Assessing the robustness of randomization tests: examples from behavioural studies. Animal Behaviour 61: 79-86. (pdf) doi: 10.1006/anbe.2000.1576
  • Peres-Neto, P.R., Olden, J.D., and D.A Jackson. 2001. Environmentally constrained null models: site suitability as occupancy criterion. Oikos 93:110-120. (pdf) doi: 10.1034/j.1600-0706.2001.930112.x

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2000

  • Mehranvar, L. and D.A. Jackson. 2000. History and taxonomy: their roles in the core-satellite hypothesis. Oecologia 127:131-142. (pdf) doi: 10.1007/s004420000574
  • Olden, J.D. 2000. An artificial neural network approach for studying phytoplankton succession. Hydrobiologia 436: 131-143. (pdf) doi: 10.1023/A:1026575418649
  • Olden, J.D., and D.A. Jackson. 2000. Torturing the data for the sake of generality: how valid are our regression models? Ecoscience 7:501-510. (pdf)
  • Peres-Neto, P.R., and F. Marques. 2000. When are random data not random, or is the PTP test useful? Cladistics 16:420-424. doi: 10.1111/j.1096-0031.2000.tb00361.x. (email me for a pdf)
  • Saint-Jacques, N., Harvey, H.H., and D.A. Jackson. 2000. Selective foraging in the white sucker (Catostomus commersoni). Canadian Journal of Zoology 78:1320-1331. (pdf) doi: 10.1139/cjz-78-8-1320

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1999

  • King, J.R. and D.A. Jackson. 1999. Variable selection with principal components analysis of environmental data . Environmetrics 10:67-77. (pdf)
  • Peres-Neto, P.R. 1999. How many statistical methods are too many? The problem of conducting multiple inferences revisited. Marine Ecology Progress Series 176: 303-306. (pdf) doi: 10.3354/meps176303

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1997

  • Jackson, D.A. 1997. Compositional data in community ecology: the paradigm or peril of proportions?  Ecology 78:929-940. (pdf) doi: 10.1890/0012-9658(1997)078[0929:CDICET]2.0.CO;2

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1996

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1995

  • Jackson, D.A. 1995. PROTEST: a PROcrustean Randomization TEST of community environment concordance. Ecoscience 2:297-303. (pdf)
  • Jackson, D.A. 1995. Bootstrapping Principal Components Analysis: Reply to Mehlman et al. Ecology 76:644-645. (pdf) doi: 10.2307/1941220

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1994

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1993

  • Jackson, D.A. 1993. Multivariate analysis of benthic invertebrate communities: the implication of choosing particular data standardizations, measures of associations, and ordination methods. Hydrobiologia 268:9-26. (pdf) doi: 10.1007/BF00005737
  • Jackson, D.A. 1993. Stopping rules in principal components analysis: a comparison of heuristical and statistical approaches. Ecology 74:2204-2214. (pdf) doi: 10.2307/1939574

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1992

  • Jackson, D.A., K.M. Somers, and H.H. Harvey. 1992. Null models and fish communities: evidence of nonrandom patterns. American Naturalist 139:930-951. (pdf) doi: 10.1086/285367

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1991

  • Jackson, D.A. and K.M. Somers. 1991. Putting things in order: the ups and downs of detrended correspondence analysis. American Naturalist 137:704-712. (pdf) doi: 10.1086/285189
  • Jackson, D.A. and K.M. Somers. 1991. The spectre of ‘spurious’ correlations. Oecologia 86:147-151. (pdf) doi: 10.1007/BF00317404

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1990

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1989

  • Jackson, D.A. and H.H. Harvey. 1989. Biogeographic associations in fish assemblages: local versus regional processes. Ecology 70:1472-1484. (pdf) doi: 10.2307/1938206
  • Jackson, D.A. and K.M. Somers. 1989. Are probability estimates from the permutation model of Mantel’s test stable? Canadian Journal of Zoology 67:766-769. (pdf) doi: 10.1139/z89-108
  • Jackson, D.A., K.M. Somers, and H.H. Harvey. 1989. Similarity coefficients: measures of co-occurrence and association or simply measures of occurrence? American Naturalist 133:436-453. (pdf) doi: 10.1086/284927